YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE24307
Organism: Caenorhabditis elegans
Length: 363 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE24307.

Description E-value Query
Range
Subject
Range
gi|15238889 - gi|15238889|ref|NP_197365.1| lipase class 3 family protein [Arabidopsis thaliana]
200.0 [0..1] [220..112]

Back

Predicted Domain #1
Region A:
Residues: [1-213]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVIVFRGTTS LSQFIDEGIS FFFLPKVPFN VTKGVVDQYY LHAFYALWNQ GMREDVQKFI  60
   61 LEKRHVKLWF FGHSLGGGLA SIASSYVAKT FKLHQSRTKL VTFGMPRIGD IDLAEAHDEL 120
  121 VPDSWRIEHR KDPIPSLPPR TFPKDQNRGS FHHTTEIWYP DGMARGARFE IGTRPDTTVG 180
  181 RSVFPFNFDD HKTYFNVAID DWWKNGFKFC HLA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 47.30103
Match: 1tglA
Description: A SERINE PROTEASE TRIAD FORMS THE CATALYTIC CENTRE OF A TRIACYLGLYCEROL LIPASE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.866238607554457 bayes_pls_golite062009
hydrolase activity 0.52702612560045 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [214-363]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ADKKFGHPIF IWGSCSNTPT KYENFLVFLS WCFYYLLLTH PPLLGFCTNT KMCTYTQHFT  60
   61 YFAGFFPNFQ SCLPTTIHME IRCAPHNLIH SHLRRLLYAN HNQITAIVMS HHVVRAVWHA 120
  121 VYAASAWPCC APARKVVAVA AAMIIADCVN 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle