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View Structure Prediction Details

Protein: CE24268
Organism: Caenorhabditis elegans
Length: 435 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE24268.

Description E-value Query
Range
Subject
Range
gi|39588202, gi|... - gi|39588202|emb|CAE68127.1| Hypothetical protein CBG13772 [Caenorhabditis briggsae], gi|187028400|em...
gi|157754529 - gi|157754529|ref|XP_001669608.1| Hypothetical protein CBG13772 [Caenorhabditis briggsae AF16]
497.0 [0..1] [435..1]

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Predicted Domain #1
Region A:
Residues: [1-98]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADENHVRLS EVQLIQSEFG HSLEECYKLA VQYYKKEHVG KQEPVGYEDR IKLLSLSKQV  60
   61 QHGEISDEFD NAGWLDITGN DVNKAWRELG SLSRDEAM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.69897
Match: 2copA
Description: Solution structure of RSGI RUH-040, an ACBP domain from human cDNA
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [99-247]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASFVFLVDRV CPPFKGFIAD KKAIKDAELK EFAPQVTEQS AQPPSLQQVD QRLFEDQRKQ  60
   61 IQEALNAQTF HQFSAYAQEQ FPGQPEQQTT LIRQLQEQHY QQYMSQVYAQ QSTTPNGAEM 120
  121 NPEESHQHQI RRDDDSDVSD DEAGEDLPS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.69897
Match: 2i1jA
Description: No description for 2i1jA was found.

Predicted Domain #3
Region A:
Residues: [248-435]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPAISPASLW NRQDINEFKA NIKKDGHEGI IKVGHGETVT VRVPTHENGS CLFWEFATDH  60
   61 YDIGFGVYFE WTVADSNQVS VHVSESDDEE DYDEALEAEQ AEAGGGGGGA AGQGGPGDVE 120
  121 AGAMQTRRVD PNKPRQDEII PVYRRDCHEE VYAGSHRYPG RGIYLLKFDN SYSLWRSKTL 180
  181 YYRVYYSK

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.03
Match: 1o6uA
Description: The Crystal Structure of Human Supernatant Protein Factor
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle