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View Structure Prediction Details

Protein: CE24206
Organism: Caenorhabditis elegans
Length: 477 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE24206.

Description E-value Query
Range
Subject
Range
gi|78194922, gi|... - gi|78223667|ref|YP_385414.1| TatD-related deoxyribonuclease:radical SAM family protein [Geobacter me...
318.0 [0..54] [474..5]

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Predicted Domain #1
Region A:
Residues: [1-160]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEPRRYGFQ QPPPPPNCCE DGGGIEDGLI RDSGLNRAGS GSGGRPVSST SNESWRNVPW  60
   61 GPPGRQGPAV HQHHQMVQVH TRRLGGAAPT MHHSRPPPPP LDRRPMSPQN ASRPLPVRGT 120
  121 NYSTNGDWPD QRPTIIQQSS RINSFPNRPV ANNSYHNENI 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [161-477]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PFKDIILELH EHTVPFIDSH CHVDFMYNQM VHNNPNSSLS HGLSHWIHRY PYGFPKSFYG  60
   61 VIANFIKPSL FVVNDGGGGN GYDIDWIINE IESNIYLGTT WGCHPHYAQE WASKDIFWQT 120
  121 LEHILSNAAT WKVLAVGECG LDLHRCISDL EVQKMVFEKH IDLAYKYQLP LVIHCRSGQK 180
  181 GRAEEQCLRI LKKKMDENHK FLKIHRHCFT ETWEVAQMWM KQCPNVYFGY TAAIFKMRER 240
  241 QQLEAIRHIP LNRILLETDA PYFRPPCFEG VGPRNVCLPG MAIATARKIA EIKELPVDEV 300
  301 LRATFDNTRL LYQIQAY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 68.522879
Match: 2gzxA
Description: No description for 2gzxA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle