YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: pri-2
Organism: Caenorhabditis elegans
Length: 503 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pri-2.

Description E-value Query
Range
Subject
Range
gi|510408, gi|631125 - pir||S45631 DNA primase chain p58 - human, gi|510408|emb|CAA52378.1| DNA primase (p58 subunit) [Homo...
600.0 [0..21] [503..6]

Back

Predicted Domain #1
Region A:
Residues: [1-107]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIFTSGANKL NDNRNVRTKI SSNRQSIKTA PTKAAEIPEY LQLYQTPPGD DISLTEFDDI  60
   61 AMERLKLLKS FENLKDSVSL YNDEFKDKFR KLCDGTKLIV FPDQKPP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [108-305]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HQEEVYELWR RDNIGHFILR LAFCRTPENQ KWLTQIEGDF LRFRLRQERE QVLDSALANV  60
   61 NFTIEKLGYT EKQAMIEDLE AACQFNLFEA PNKTFYKVDF IDAIELIRRG SVHLKKGFAY 120
  121 FPFDDLVTIL VTKMKNNMMA AMARSFKHLA ILEEEGRLLP RLSLLSNNAY SGKDYNGEQP 180
  181 DGSIIVTRHM IDKLSRRS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.69897
Match: 2dlaA
Description: No description for 2dlaA was found.

Predicted Domain #3
Region A:
Residues: [306-406]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FAPCMKQMHN HLRVNHHLKY GARRQYGLFL KGIGLSLDEA IAMMRDEFTK KITSDKFDKE  60
   61 YGYNIRYMYG KEGRRVAQTA MSCATIILRN PPSAVDCHGC P

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [407-503]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FRHSEKQVLK QKLGSDAILK KEQIERIAEL AELNQYDKAC TRYFEFMHNL EEGGLGQLIT  60
   61 HPNQFYEESQ KIVAERIAAK QESQEAPAPK IEKMDTE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle