YRC Public Data Repository - Protein Structure Prediction

Protein:	CE23948
Organism:	Caenorhabditis elegans
Length:	261 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE23948.

Description	E-value	Query Range	Subject Range
gi\|50756506 - gi\|50756506\|ref\|XP_415191.1\| PREDICTED: similar to potassium channel tetramerisation domain containi...	240.0	[0..18]	[256..122]
BACD3_MOUSE - BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 3 OS=Mus musculus GN=Kc...	239.0	[0..18]	[256..30]
gi\|14042295 - gi\|14042295\|dbj\|BAB55188.1\| unnamed protein product [Homo sapiens]	238.0	[0..18]	[256..27]
gi\|114646841 - gi\|114646841\|ref\|XP_001137814.1\| PREDICTED: similar to MSTP028 isoform 2 [Pan troglodytes]	238.0	[0..18]	[256..38]
gi\|109098659 - gi\|109098659\|ref\|XP_001105027.1\| PREDICTED: similar to potassium channel tetramerisation domain cont...	238.0	[0..18]	[256..38]
BACD3_RAT - BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 3 OS=Rattus norvegicus ...	237.0	[0..18]	[256..30]
tr\|M3X4F5\|M3X4F5... - Potassium channel tetramerization domain containing 10 OS=Felis catus GN=KCTD10 PE=4 SV=1 ENSPTRT00000009949 - null gi\|151554137, gi... - gi\|76639197\|ref\|XP_613559.2\| PREDICTED: similar to MSTP028 [Bos taurus], gi\|155372153\|ref\|NP_0010946...	237.0	[0..18]	[256..30]

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Predicted Domain #1

Region A:
Residues: [1-261]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVKFSIIFL IFFIFRLQAQ EIKLYVGGTE FTTSIKTLLN TESALKNYVV RYELKTERTP  60
   61 ELITIDRSPK HFDTILNFLR DGDVPLPVNE LVLAEVRQEA EFFRLNGLIQ LCDVKSATVK 120
  121 KVTISDCEAK NVFKDHFKPA IINDDQKMVE ILANIDKKPV LIVSFYIPRN GLIHFPSGFT 180
  181 FKTFVELYQN RLDVYFKVTH YATDDEQPTS NWSFGIYGKR KDCDIIRSGP LLNFMADLEE 240
  241 KIQQYFAKEE EEERKLEIVI E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.09691
Match:	2a79B
Description:	Mammalian Shaker Kv1.2 potassium channel- beta subunit complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits