YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE23901
Organism: Caenorhabditis elegans
Length: 352 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE23901.

Description E-value Query
Range
Subject
Range
gi|62129446, gi|... - gi|62181813|ref|YP_218230.1| octaprenyl diphosphate synthase [Salmonella enterica subsp. enterica se...
lcl|NC_016856.1_... - [gene=ispB] [protein=octaprenyl diphosphate synthase] [protein_id=YP_005239484.1] [location=3487069....
292.0 [0..1] [351..61]

Back

Predicted Domain #1
Region A:
Residues: [1-352]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFASRKLVET ALGEVKKKFV RVVAAKLPAD GMEYDLVQYR CRNLFDNTVI GGKYSRASLC  60
   61 VDTIRALQPH LRDETQELQA VCEAAATLEI IQSFYLIADD IMDNSETRRG KPCWFRREGV 120
  121 GMSAINDAFI MDSFVEDILR LALPGHVNLD RLCEAYRKSK QKTLIGQFLD TSSVNQISSF 180
  181 TWDRYELMVE NKTSHYTVFH PIQMALIISD VLAYHGSVKK VAYQIGFLFQ SQDDFLDVYG 240
  241 DPKITGKIGT DIQDGKCTWL AVRALQKMHK TPEKWGAKLI EEFKTSFGSV DPEKVEKIKR 300
  301 IYDELQLKQE FRRFEKHFSG EIKKSISEIP DVINPLRPVL DGFVTKLVNR NA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 74.522879
Match: 1yq7A
Description: Human farnesyl diphosphate synthase complexed with risedronate
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle