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View Structure Prediction Details

Protein: CE23884
Organism: Caenorhabditis elegans
Length: 228 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE23884.

Description E-value Query
Range
Subject
Range
gi|157775257 - gi|157775257|ref|XP_001665694.1| hypothetical protein CBG18046 [Caenorhabditis briggsae AF16]
gi|187025107, gi... - gi|39591612|emb|CAE71189.1| Hypothetical protein CBG18046 [Caenorhabditis briggsae], gi|187025107|em...
322.0 [0..1] [226..1]

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Predicted Domain #1
Region A:
Residues: [1-120]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSNLIRFVG NHDIASEGKF LFEILSQLRN FGVGRLVTKN EWTRKWPNNP SYMKILRAEP  60
   61 GMDRWLFEGK VYAEWVFRGK NLGVYEFSKD LNRSDWQLVH KHQEKSYTSS TTPMQDLVLP 120
  121 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [121-228]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSFPLPPLQV HLSQKSARKN GLDEKTVSRR APLTLSVDPE FQHLKPFIKQ EAPSTKSVSI  60
   61 YEEVDKNALL DLYGNELPVK VEAWNAGPAM FQPRFNATTM RVEEQPPK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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