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View Structure Prediction Details

Protein: CE23832
Organism: Caenorhabditis elegans
Length: 630 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE23832.

Description E-value Query
Range
Subject
Range
gi|157747717 - gi|157747717|ref|XP_001668953.1| Hypothetical protein CBG12746 [Caenorhabditis briggsae AF16]
gi|39595791, gi|... - gi|39595791|emb|CAE67294.1| Hypothetical protein CBG12746 [Caenorhabditis briggsae], gi|187029335|em...
445.0 [0..3] [630..4]

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Predicted Domain #1
Region A:
Residues: [1-139]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTDVEAARR KYEDRRRKIQ EEEMKERRDG MNLSSGDDDQ DVDDMFLTAL QRKREKVHRR  60
   61 ALLKQVLAPT MNQKEEIERK RKKKEEDKQS EEARKTLLEK HAEIMETQGV IDESERQLME 120
  121 EEELLDKVTR GGGLLAVAE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [140-630]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LTKGEKYEEP IVTAWRPPGH IRRQSQEDYE IQRKRLGISC EGDHIPPPIG SFLEMKFPKS  60
   61 LLEFMQKQKG IVTPTAIQIQ GIPVALSGRD MIGIASTGSG KTMTFVLPLV MFCLEQEMKL 120
  121 PFMRSEGPFG LIIVPSRELA RQIFDLIIEM FDALGKAGLP EMRAGLCIGG VPIGEQAKDV 180
  181 RDGIHIVVAT PGRLSDMLTK KIINLEVCRY LVLDEADRML DMGFEDEIKS IFYFFKAQRQ 240
  241 TLLFSATMPR KIQFFAKSAL VKPIVVNVGR AGAASLNVLQ ELEFVRSENK LVRVLECLQK 300
  301 TSPKVLIFAE KKVDVDNIYE YLLVKGVEVA SIHGGKDQSD RHAGIEAFRK NEKDVLVATD 360
  361 VASKGLDFQG IEHVINFDMP EDIENYVHRI GRTGRSGRKG LATTFINKKS EMSVLSDLKQ 420
  421 LLAEAGQELP EFLKMLAGDE EGTAPAGTNA EKGCAYCSGL GHRITDCPKL AGIGNKTTQA 480
  481 LARGGGDDGG F

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 96.0
Match: 2db3A
Description: No description for 2db3A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle