YRC Public Data Repository - Protein Structure Prediction

Protein:	pfd-2
Organism:	Caenorhabditis elegans
Length:	141 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pfd-2.

Description	E-value	Query Range	Subject Range
gi\|62901934 - gi\|62901934\|gb\|AAY18918.1\| prefoldin subunit 2 [synthetic construct]	120.0	[0..4]	[141..34]
gi\|54642417, gi\|... - gi\|54642417\|gb\|EAL31166.1\| GA19501 [Drosophila pseudoobscura pseudoobscura], gi\|125979239\|ref\|XP_001... gi\|54642417\|gb\|E... - GA19501-PA [Drosophila pseudoobscura], GA19501 [Drosophila pseudoobscura pseudoobscura] gi\|194117417, gi... - gi\|195175068\|ref\|XP_002028285.1\| GL17097 [Drosophila persimilis], gi\|194117417\|gb\|EDW39460.1\| GL1709...	119.0	[0..1]	[141..1]
gi\|5690431 - gi\|5690431\|gb\|AAD47084.1\|AF165883_1 prefoldin subunit 2 [Homo sapiens]	117.0	[0..18]	[141..25]
gi\|3212116 - gi\|3212116\|emb\|CAA76760.1\| prefoldin subunit 2 [Mus musculus]	115.0	[0..16]	[141..22]
gi\|28189659 - gi\|28189659\|dbj\|BAC56444.1\| similar to prefoldin subunit 2 [Bos taurus]	115.0	[0..4]	[141..8]
gi\|116059590 - gi\|116059590\|emb\|CAL55297.1\| Molecular chaperone Prefoldin, subunit 2 (ISS) [Ostreococcus tauri]	111.0	[0..16]	[138..112]
gi\|109499041, gi... - gi\|149040685\|gb\|EDL94642.1\| rCG20392, isoform CRA_a [Rattus norvegicus], gi\|109499041\|ref\|XP_0010553...	110.0	[0..17]	[141..22]

Back

Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAAQTAAAT PAEQEEQRKV VEKFKALRDQ QQDIAAEVTR IEEERREFGR VLEVIKDLEP  60
   61 DQKCFRLISD TLVEYTVKDV IPDLQNNIAN LTIVSKQLND QLVEKGKELN THKTTHNIRL 120
  121 LTEKESAELR KAEALGQLPK A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.0
Match:	1fxkB
Description:	Prefoldin beta subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits