YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: scl-12
Organism: Caenorhabditis elegans
Length: 208 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for scl-12.

Description E-value Query
Range
Subject
Range
scl-13 - extracellular protein status:Confirmed UniProt:Q9N5N4 protein_id:AAF39876.1
201.0 [0..1] [207..1]

Back

Predicted Domain #1
Region A:
Residues: [1-208]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFALYLIAI FGCATAQFSS TAQTAIVKAH NDLRSAIALG NYDAAGTIEP PAANMRKIKW  60
   61 DSTVASSAQQ YANTCPDDHS GTEYGENLYW SWSSSAPTSL DKFGVAASNS WEKEFQDYGW 120
  121 ESTYMDADLF DSGIGHATQM AWAETNKIGC GVKNCGKDSS MNNMYKVAVV CQYDQAGNMM 180
  181 DSDIYQSGDT CSFCPSGSKC EEASGLCP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 36.0
Match: 1u53A
Description: Novel X-Ray Structure of Na-ASP-2, a PR-1 protein from the nematode parasite Necator americanus and a vaccine antigen for human hookworm infection
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle