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View Structure Prediction Details

Protein: CE23774
Organism: Caenorhabditis elegans
Length: 488 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE23774.

Description E-value Query
Range
Subject
Range
gi|91089229 - gi|91089229|ref|XP_968302.1| PREDICTED: similar to CG5304-PA [Tribolium castaneum]
289.0 [0..47] [487..574]

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Predicted Domain #1
Region A:
Residues: [1-488]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTFLYEMVSP RAPKIRRVEA FSEMGQSSEV HPEFGFPQIR KTSSFVFWNR TRLYIMVLTL  60
   61 ACLTFIQMNT LTFNFTVICM EDIVEDYNLL TNYTDTHWFE RNTEKSLLFS GAAIGGLIGL 120
  121 IPAVPLISSL GLGNVQTISG IISAFGAFLF PLAVSIGFYT SLLCRILQGV GSAIMFTTVG 180
  181 VVPGVWAPSN EANTFMAILS CALQLSNIIC MPVSGLLCES ALGWRSIYYL FGGLTFIIYI 240
  241 VFWFTYSDDP KLHRNVSQKE LGKISTGKIE KIKEPVPYLA ICTDPTVLIT WTSCFGGNMA 300
  301 FFALSLYGPT YLREILKFDV RETGFLSALP FILSAIVKFG AGQLSDRMTF LSEKARFVFF 360
  361 AATSQIGFAV GLVVMAFTSD RLIAQIAFNF AIVSSGLNIM GVIKCIQLRC RQHVHFAIAV 420
  421 ISFTAYVVQF LAPIIVSIIC PDNTPEQWTI LFLFITGVII VCNAGFPFIT RSDPAAYTKQ 480
  481 INVENVEK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 46.221849
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle