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View Structure Prediction Details

Protein: CE23727
Organism: Caenorhabditis elegans
Length: 342 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE23727.

Description E-value Query
Range
Subject
Range
gi|39585743, gi|... - gi|39585743|emb|CAE59945.1| Hypothetical protein CBG03432 [Caenorhabditis briggsae], gi|187036653|em...
gi|157756973 - gi|157756973|ref|XP_001670830.1| Hypothetical protein CBG03432 [Caenorhabditis briggsae AF16]
374.0 [0..2] [342..2]

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Predicted Domain #1
Region A:
Residues: [1-342]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTILIQLIV LFTLFHEVNT LVTCSRCEFG NEECNFSRST CRGDFCYHAQ YFYGNEMMPT  60
   61 IQKGCVIGEV APEGCRVNHH GNVMCFCSDA DYCNANYTSL ADTATTILPV QTCQPEKVNN 120
  121 MPKPRWTKPC AANYCTFIEA KTQTEVNSAN YTWSTKDCNK ENEFDFFPTL TVFNFYPGTC 180
  181 VWLNYGGQPD THACYGSDSL DTTLVFDVTT ATTECHVDYF NPRLPYVKSG SSCIGQFCFI 240
  241 SATSRGEVFR GCVNSVTVEG ATPLKIGYTR AYTGLEQWIC DQSYCNADLK SAELSWPPEL 300
  301 YLYRNISNLR EFNVFYIDSA RSSSSIFLAI PIVFLINYCL FH

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.44
Match: 1ywhA
Description: crystal structure of urokinase plasminogen activator receptor
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle