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View Structure Prediction Details

Protein: CE23643
Organism: Caenorhabditis elegans
Length: 356 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE23643.

Description E-value Query
Range
Subject
Range
gi|39593885, gi|... - gi|39593885|emb|CAE62178.1| Hypothetical protein CBG06225 [Caenorhabditis briggsae], gi|187034359|em...
gi|157755625 - gi|157755625|ref|XP_001670156.1| Hypothetical protein CBG06225 [Caenorhabditis briggsae AF16]
224.0 [0..1] [346..1]

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Predicted Domain #1
Region A:
Residues: [1-218]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVKAVLGDL QIVVERHSDV LRNNALPFRF LVVLRIIGYI ISYLHFARLL LWLHPYQIAS  60
   61 IELWRIATST FCGHNVLDVL WTVWCLHFGT NLVRLNNTNE SLLKLYAITQ GVTTFVIVVF 120
  121 AYLTYILFDS IKFFYIEPLV GMTPICASVM VLMKQFLPDT IVLATPLGRI KYAHLPFLAI 180
  181 FVSFILALTK FTYFVSFLQI TIGVQVSWTY LRFYKPHE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.522879
Match: 2ic8A
Description: No description for 2ic8A was found.

Predicted Domain #2
Region A:
Residues: [219-356]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDEIYGDGSE HFTWASLFPS RTQLFFTLIG KVCFRTLARM GVCKRQVRHV DLHSLQSGSV  60
   61 GINLPALENS AKDSERRRQK ALKELNDRLN KTRTAEVASY GNWDDGDDDE PTEVTVVAPP 120
  121 PVSNVHSSKP AMDKESMA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle