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View Structure Prediction Details

Protein: erd-2
Organism: Caenorhabditis elegans
Length: 213 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for erd-2.

Description E-value Query
Range
Subject
Range
gi|47214332 - gi|47214332|emb|CAG00841.1| unnamed protein product [Tetraodon nigroviridis]
367.0 [0..1] [206..1]

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Predicted Domain #1
Region A:
Residues: [1-112]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLFRFTADV AHAIAIVVLL LKIWKSRSCE GISGRSQLLF ALVFVTRYLD LFTNFFSFYN  60
   61 TAMKIFYLVA SFGTVYLMWA KFKATYDRNN DSFRIEFLVI PSMILALLIN HE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [113-213]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FIFMEVMWTF SIYLEAVAIM PQLFMLSRTG NAETITAHYL FALGSYRFLY ILNWVYRYYT  60
   61 ESFFDPISVV AGIVQTVLYA DFFYLYITRV IQSNRQFEMS A

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle