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View Structure Prediction Details

Protein: olrn-1
Organism: Caenorhabditis elegans
Length: 554 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for olrn-1.

Description E-value Query
Range
Subject
Range
gi|157771782 - gi|157771782|ref|XP_001677711.1| Hypothetical protein CBG07722 [Caenorhabditis briggsae AF16]
gi|187033204, gi... - gi|39596707|emb|CAE63326.1| Hypothetical protein CBG07722 [Caenorhabditis briggsae], gi|187033204|em...
995.0 [0..1] [554..1]

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Predicted Domain #1
Region A:
Residues: [1-113]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRCSAPREI SVSEETTEKS GRKSPKSPIE CRKLSKAPPL CCKNGEECKV AGNCVCKPPK  60
   61 PTGPNDEKPT SSRETYDVFL GGSCGTTVWR RQSVIPFLKK RGITYYDPQR SFW

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [114-264]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SENMIYEESI AKESSSLFLF VIDPATVNAT SFLEIAYFAA RKSPKLVVVF LGKTEWAEKA  60
   61 HPDDLPDRNR TCQLLDRILE CHQVPMLHTI PDALEFIEEE MLGRQSLTEA MRSKNNRLPY 120
  121 LQIRARRVVR NVKSLAAQTI KVCKNYATKT V

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [265-421]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VTGLIDLTVL LSISFAFPAL PLFYILVPLL MLNIVFFGVI YKVQELRKRY PRMIADSSAV  60
   61 MYHATAAIPS PRVTLKATNV NGTISSKTLV RRRSKQNFEK FFPDDSGASS FIVPSSFLPK 120
  121 QHETKVNIDC SVVELCSSSP DDNSWVQELA APTLDGK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [422-554]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GTPYSYVLAT PNFQLDNRMN CLRTWFHHHK KFFYYIPSTT TFLSGMVEIA YILGHTNWEG  60
   61 TVCVPATSQI LEGPDDMTAD EKDHARAARR RRNDCYQIAF CYLKDMAKRR QCRVFTDIGV 120
  121 AVKALVDPAI RGV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle