YRC Public Data Repository - Protein Structure Prediction

Protein:	snr-1
Organism:	Caenorhabditis elegans
Length:	136 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for snr-1.

Description	E-value	Query Range	Subject Range
gi\|157754287 - gi\|157754287\|ref\|XP_001669487.1\| Hypothetical protein CBG00427 [Caenorhabditis briggsae AF16] gi\|187039115, gi... - gi\|39585219\|emb\|CAE57462.1\| Hypothetical protein CBG00427 [Caenorhabditis briggsae], gi\|187039115\|em...	144.0	[0..1]	[136..1]
gi\|66362186 - gi\|66362186\|ref\|XP_628057.1\| small nucealr riboprotein SMD3, SM domain [Cryptosporidium parvum Iowa ... gi\|46227630 - gi\|46227630\|gb\|EAK88565.1\| small nucealr riboprotein SMD3, SM domain [Cryptosporidium parvum Iowa II...	120.0	[0..3]	[122..24]
gi\|110758613 - gi\|110758613\|ref\|XP_001120143.1\| PREDICTED: similar to small nuclear ribonucleoprotein D3 [Apis mell...	118.0	[0..3]	[136..2]
gi\|91084331 - gi\|91084331\|ref\|XP_972583.1\| PREDICTED: similar to AGAP012380-PA [Tribolium castaneum]	117.0	[0..3]	[136..2]
gi\|50732862 - gi\|50732862\|ref\|XP_418799.1\| PREDICTED: similar to KIAA0851 protein [Gallus gallus]	116.0	[0..1]	[98..644]
gi\|92899281 - gi\|92899281\|gb\|ABE94617.1\| Like-Sm ribonucleoprotein-related, core [Medicago truncatula]	116.0	[0..1]	[128..1]
gi\|54657392 - gi\|54657392\|gb\|EAL36172.1\| aspartyl protease-like [Cryptosporidium hominis] gi\|67601489 - gi\|67601489\|ref\|XP_666403.1\| aspartyl protease-like [Cryptosporidium hominis TU502]	115.0	[0..3]	[122..2]
gi\|46101621, gi\|... - gi\|71023653\|ref\|XP_762056.1\| hypothetical protein UM05909.1 [Ustilago maydis 521], ref\|XP_403524.1\| ...	115.0	[0..1]	[116..1]
gi\|85091383 - gi\|85091383\|ref\|XP_958875.1\| hypothetical protein [Neurospora crassa OR74A] gi\|28920264, gi\|... - gi\|32414377\|ref\|XP_327668.1\| hypothetical protein [Neurospora crassa], gi\|28920264\|gb\|EAA29639.1\| hy...	113.0	[0..9]	[135..65]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSVGVPIKI LHEAEGHMVT LETVTGEVYR GKLSEAEDNM NCQLAETVVT FRDGRSHQLD  60
   61 NVFIRGNKIR FMILPDMLKN APMFKNIGRA QKGAIGMGLG GLDQRGRGRG TAFRRPMGRG 120
  121 GPRGMSRPGG APTFRG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.69897
Match:	1d3bA
Description:	D3 core SNRNP protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits