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View Structure Prediction Details

Protein: CE23313
Organism: Caenorhabditis elegans
Length: 328 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE23313.

Description E-value Query
Range
Subject
Range
CE24656 - status:Partially_confirmed UniProt:Q9NA50 protein_id:CAB60550.1
223.0 [0..1] [328..1]

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Predicted Domain #1
Region A:
Residues: [1-149]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHLSTGFLVF LTALSHVDSL NVNTKLVLIW GSPNDTEISE TYSGSWDECL QKCYYDVTCV  60
   61 VIFRTSAGCK IYKIGTPFSV QKIIGAGGNI VGIKRTQEDC SETFSRPMFG QTTVTESFTS 120
  121 EKIVFNYTIS EIENDDLIEW KFDFKYFVQ

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 24.823909
Match: PF08277.3
Description: No description for PF08277.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [150-328]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CDEESFASIR GDIAVCISIR TFFGPFCQNR AAGRFFFCVQ KETGLSLQAP MRTQKDTLLD  60
   61 AKNHDLMYFT SRIFCGFVAL LNYLTKKSNS ALPPTRYSNM YFWIDGIRSS SAQYNMSDPT 120
  121 LNGITCFNWG PNSQEGVPNA SALIEGTSIV RYWDCDATEN GNSYCLRGAV CRIKPVSHT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.0
Match: 1tdqB
Description: Structural basis for the interactions between tenascins and the C-type lectin domains from lecticans: evidence for a cross-linking role for tenascins
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
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