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View Structure Prediction Details

Protein: ftr-1
Organism: Caenorhabditis elegans
Length: 314 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ftr-1.

Description E-value Query
Range
Subject
Range
fog-2 - status:Confirmed UniProt:Q9U2X8 protein_id:CAB54327.1
221.0 [0..1] [308..1]

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Predicted Domain #1
Region A:
Residues: [1-314]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKNLADELD SMKISGPPSL FEMPTEMVYK IAGKVDPFSR LTVRKVCRNL RNVIDDTDPG  60
   61 FKKVEVDLGG YAGSHRLCLT SSICSYISYS PNSNNPGCTV ERNSQRKSIE KTQLNAILDD 120
  121 LAVIVKNPKL RLDNFVIVSS CGNSKEFVEW LREITQSGSL LHTKRIRVID CPGDLLGVLS 180
  181 HCKPGFLEAI EFYCFNSGKI DEITNLEQWK RAKSINIDSR RCDDIPIEHF FHFSRFTIRM 240
  241 GKLSVPDAIK IRDDLMKSAH FEYGIIDIYD ELTPEAARVF NPNFIAHNRD GIENKIEQFL 300
  301 LTIYRKRLEI KKID

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.32
Match: 1fs2A
Description: Skp2; Cyclin A/CDK2-associated p19, Skp2
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle