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View Structure Prediction Details

Protein: ssu-1
Organism: Caenorhabditis elegans
Length: 412 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ssu-1.

Description E-value Query
Range
Subject
Range
gi|157766486 - gi|157766486|ref|XP_001675586.1| Hypothetical protein CBG12932 [Caenorhabditis briggsae AF16]
gi|187029099, gi... - gi|39595937|emb|CAE67440.1| Hypothetical protein CBG12932 [Caenorhabditis briggsae], gi|187029099|em...
352.0 [0..1] [408..1]

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Predicted Domain #1
Region A:
Residues: [1-412]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPKTPKTPK PPQTPRPMLT VGSPPCTPCS PFVLNATSFC FRKGPARSVV YQPNGHPKQV  60
   61 VIDGEIWPPI FKPKNVRTAK SMQFGETDVV IATYPKCGTT WLQHITSQLI KGHDYKAGKG 120
  121 NELCVQSPMI ERMGAAFADN IKGPRVLKTH FHHYNIPKYP DTKYIYCVRN PKDCLTSYFH 180
  181 HNRNFKIYNW ANGTWDVFLD LFASGQLAFG DYFEHLLSWL PCLKDDNVLF LKYEDMFQDL 240
  241 ENAVYKIGQF LGGEAAHRVE NPEILREIVD NSTIDAMKKD QKRWFPESQL HKVEFIRKGG 300
  301 SRDWKNYFTR EQSDRIDSIF AAKFAGTPAE HWWKYEMAWE EKPLSIENLS MEEEEEEQSQ 360
  361 KLFALPPLPP QRRFSRTSLL SAGYGSVWSL SSQNANMSAS SSVNKDLSTF AE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 66.0
Match: 2ad1A
Description: Human Sulfotransferase SULT1C2
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle