YRC Public Data Repository - Protein Structure Prediction

Protein:	snr-7
Organism:	Caenorhabditis elegans
Length:	77 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for snr-7.

Description	E-value	Query Range	Subject Range
gi\|50728518 - gi\|50728518\|ref\|XP_416157.1\| PREDICTED: similar to Small nuclear ribonucleoprotein F (snRNP-F) (Sm p...	97.0	[0..4]	[73..210]
gi\|73978207 - gi\|73978207\|ref\|XP_539726.2\| PREDICTED: similar to Small nuclear ribonucleoprotein F (snRNP-F) (Sm p...	97.0	[0..4]	[73..200]
gi\|94388852 - gi\|94388852\|ref\|XP_919276.2\| PREDICTED: similar to Small nuclear ribonucleoprotein F (snRNP-F) (Sm p...	96.0	[0..4]	[73..157]
gi\|33876795 - gi\|33876795\|gb\|AAH02505.2\| SNRPF protein [Homo sapiens]	94.0	[0..4]	[73..51]
gi\|74353864 - gi\|74353864\|gb\|AAI02193.1\| SNRPF protein [Bos taurus]	93.0	[0..4]	[73..39]
gi\|116059834 - gi\|116059834\|emb\|CAL55541.1\| Ypt/Rab GTPase activating protein (ISS) [Ostreococcus tauri]	92.0	[0..1]	[75..758]
gi\|187029601, gi... - gi\|39589637\|emb\|CAE66872.1\| Hypothetical protein CBG12250 [Caenorhabditis briggsae], gi\|187029601\|em... gi\|157776384 - gi\|157776384\|ref\|XP_001666258.1\| hypothetical protein CBG12250 [Caenorhabditis briggsae AF16]	91.0	[0..3]	[77..7]
AGAP002658-PA - small nuclear ribonucleoprotein polypeptide F\|protein_coding\|2R:25205095:25205361:1\|gene:AGAP002658 gi\|31212897, gi\|... - gi\|31212897\|ref\|XP_312266.1\| AGAP002658-PA [Anopheles gambiae str. PEST], gi\|30177439\|gb\|EAA07677.2\|...	91.0	[0..1]	[75..5]

Back

Predicted Domain #1

Region A:
Residues: [1-77]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKTHPPELK KYMDKEMDLK LNGNRRVSGI LRGFDPFMNM VIDEAVEYQK DGGSVNLGMT  60
   61 VIRGNSVVIM EPKERIS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.522879
Match:	1i4kA
Description:	Archaeal homoheptameric Sm protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits