| Protein: | npp-16 |
| Organism: | Caenorhabditis elegans |
| Length: | 497 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for npp-16.
| Description | E-value | Query Range |
Subject Range |
|
|
220.0 | [0..124] | [495..778] |
|
Region A: Residues: [1-185] |
1 11 21 31 41 51
| | | | | |
1 MNSLIPPPTS EQQMNMFRLR DKMSLLNAEF LKVINGYFTE KNHYDFSGTM KSYMDHVAQL 60
61 KQIYKVDDDV AADMTVPRRT ENSSESSGET VAPRKIAKAV RKNGTPKNPL NSTVFAASSP 120
121 AATVASVPKF GDISVITKET PAPLAKTAEP LVAPAAPATA RKRAIRGGGP LGGAESVVFK 180
181 SGEDG
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [186-341] |
1 11 21 31 41 51
| | | | | |
1 QAATSSVKIP ATTIKFPEPT KDFWTKKSDA PAAPSNSGSL FAFLGKDGDK PKETPKFSGF 60
61 SFGKKPAEPS EEPKAADSTP KLTFGSPKEA DLPKPASSLF GASPSKPLVF GGSSADSTTS 120
121 APKPFSALST AASLFGSSSA STTTTATQPL SFGSSS
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [342-497] |
1 11 21 31 41 51
| | | | | |
1 TGGSSLFSGF AGLAQKAMEN QNQAKPEGSG EDDEGEYVPP KVETVENQEP DAVLSSKVSV 60
61 FKFTGKEYTK LGVGMLHIKD NDGKFSVLIR AATATGTVWL NSLCNKAMKA TVVDAKGDRI 120
121 RLTCPSSSTE MATMMIRFGT ADGAKKFTDK ILEVAV
|
| Detection Method: | |
| Confidence: | 40.69897 |
| Match: | 1k5dB |
| Description: | Ran-binding protein 1, Ranbp1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.597587183571285 | bayes_pls_golite062009 |
| protein binding | 0.29116370406325 | bayes_pls_golite062009 |
