YRC Public Data Repository - Protein Structure Prediction

Protein:	CE22483
Organism:	Caenorhabditis elegans
Length:	84 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE22483.

Description	E-value	Query Range	Subject Range
gi\|187030608, gi... - gi\|39582724\|emb\|CAE65930.1\| Hypothetical protein CBG11103 [Caenorhabditis briggsae], gi\|187030608\|em...	137.0	[0..1]	[84..1]
gi\|195556994, gi... - gi\|195556994\|ref\|XP_002077227.1\| GD25376 [Drosophila simulans], gi\|194202320\|gb\|EDX15896.1\| GD25376 ... gi\|195359298, gi... - gi\|195359298\|ref\|XP_002045341.1\| GM19294 [Drosophila sechellia], gi\|194129331\|gb\|EDW51374.1\| GM19294... gi\|220959684 - gi\|220959684\|gb\|ACL92385.1\| CG40228-PC [synthetic construct] FBpp0306002, CG4... - This gene is referred to in FlyBase by the symbol Dmel\CG40228 (CG40228, FBgn0063670). It is a prote...	136.0	[0..1]	[82..1]
gi\|91090556 - gi\|91090556\|ref\|XP_971424.1\| PREDICTED: similar to CG40228 CG40228-PC [Tribolium castaneum]	135.0	[0..1]	[82..1]
gi\|108880704, gi... - gi\|157138064\|ref\|XP_001657220.1\| hypothetical protein AaeL_AAEL003749 [Aedes aegypti], gi\|108880704\|...	135.0	[0..1]	[82..1]
gi\|50312049, gi\|... - gi\|50312049\|ref\|XP_456056.1\| unnamed protein product [Kluyveromyces lactis], gi\|49645192\|emb\|CAG9876... gi\|49645192 - gi\|49645192\|emb\|CAG98764.1\| KLLA0F21868p [Kluyveromyces lactis]	134.0	[0..1]	[84..1]
gi\|49525268 - gi\|49525268\|emb\|CAG58881.1\| unnamed protein product [Candida glabrata] gi\|50287065, gi\|... - gi\|50287065\|ref\|XP_445962.1\| unnamed protein product [Candida glabrata], gi\|49525268\|emb\|CAG58881.1\|...	134.0	[0..1]	[84..1]
gi\|90301238, gi\|... - gi\|90301238\|gb\|EAS30869.1\| hypothetical protein CIMG_06348 [Coccidioides immitis RS], gi\|119182660\|r...	133.0	[0..1]	[81..1]
ELF1_YEAST - Transcription elongation factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ELF1 P... ELF1 - Transcription elongation factor that contains a conserved zinc finger domain; implicated in the main... gi\|190409683 - gi\|190409683\|gb\|EDV12948.1\| transcription elongation factor 1 [Saccharomyces cerevisiae RM11-1a]	133.0	[0..1]	[84..1]
AGAP003707-PA - Transcription elongation factor 1 homolog\|protein_coding\|2R:42208564:42208812:1\|gene:AGAP003707 gi\|30177009, gi\|... - gi\|31209067\|ref\|XP_313500.1\| AGAP003707-PA [Anopheles gambiae str. PEST], gi\|30177009\|gb\|EAA44682.1\|...	132.0	[0..1]	[82..1]
gi\|60690232 - gi\|60690232\|gb\|AAX30502.1\| SJCHGC04188 protein [Schistosoma japonicum]	132.0	[0..1]	[82..1]

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Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKRKSKRKA PTKAKAVMPL DTQFNCPFCN HERVCEVKMD REKNVGYISC RVCSEDFQTN  60
   61 INYLSEPIDV YSDWVDACEQ ANNA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.30103
Match:	1wiiA
Description:	Solution structure of RSGI RUH-025, a DUF701 domain from mouse cDNA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits