YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: ctl-2
Organism: Caenorhabditis elegans
Length: 500 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ctl-2.

Description E-value Query
Range
Subject
Range
gi|109106805 - gi|109106805|ref|XP_001115625.1| PREDICTED: catalase isoform 2 [Macaca mulatta]
679.0 [0..2] [499..4]

Back

Predicted Domain #1
Region A:
Residues: [1-500]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPNDPSDNQL KTYKETYPKP QVITTSNGAP IYSKTAVLTA GRRGPMLMQD VVYMDEMAHF  60
   61 DRERIPERVV HAKGAGAHGY FEVTHDISKY CKADIFNKVG KQTPLLIRFS TVGGESGSAD 120
  121 TARDPRGFAI KFYTEEGNWD LVGNNTPIFF IRDPIHFPNF IHTQKRNPQT HLKDPNMIFD 180
  181 FWLHRPEALH QVMFLFSDRG LPDGYRHMNG YGSHTFKMVN KDGKAIYVKF HFKPTQGVKN 240
  241 LTVEKAGQLA SSDPDYSIRD LFNAIEKGDF PVWKMFIQVM TFEQAEKWEF NPFDVTKVWP 300
  301 HGDYPLIEVG KMVLNRNPRN YFAEVEQSAF CPAHIVPGIE FSPDKMLQGR IFSYTDTHFH 360
  361 RLGPNYIQLP VNCPYRSRAH NTQRDGAMAY DNQQHAPNFF PNSFNYGKTR PDVKDTTFPA 420
  421 TGDVDRYESG DDNNYDQPRQ FWEKVLDTGA RERMCQNFAG PLGECHDFII KGMIDHFSKV 480
  481 HPDFGARVKA LIQKQARSHI 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 1tguA
Description: The crystal structure of bovine liver catalase without NADPH
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalase activity 8.51144125131094 bayes_pls_golite062009
peroxidase activity 6.21360523181668 bayes_pls_golite062009
oxidoreductase activity, acting on peroxide as acceptor 6.21360523181668 bayes_pls_golite062009
antioxidant activity 6.04714571701065 bayes_pls_golite062009
oxidoreductase activity 4.53518604474275 bayes_pls_golite062009
catalytic activity 2.21594208202467 bayes_pls_golite062009
binding 1.7977175288758 bayes_pls_golite062009
protein binding 1.4378207235312 bayes_pls_golite062009
hydrolase activity 0.904643040470721 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle