YRC Public Data Repository - Protein Structure Prediction

Protein:	glrx-5
Organism:	Caenorhabditis elegans
Length:	142 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for glrx-5.

Description	E-value	Query Range	Subject Range
gi\|118782693, gi... - gi\|118782693\|ref\|XP_312440.3\| AGAP002500-PA [Anopheles gambiae str. PEST], gi\|116129689\|gb\|EAA07977.... AGAP002500-PA - monothiol glutaredoxin\|protein_coding\|2R:22049646:22050154:-1\|gene:AGAP002500	157.0	[0..1]	[142..4]
gi\|86609804 - gi\|86609804\|ref\|YP_478566.1\| glutaredoxin-like protein [Cyanobacteria bacterium Yellowstone B-Prime] gi\|86558346, gi\|... - gi\|86609804\|ref\|YP_478566.1\| glutaredoxin-like protein [Synechococcus sp. JA-2-3B'a(2-13)], gi\|86558...	145.0	[0..29]	[137..1]
gi\|25318369 - pir\|\|AE1906 hypothetical protein alr0799 [imported] - Nostoc sp. (strain PCC 7120) gi\|17228294, gi\|... - gi\|17228294\|ref\|NP_484842.1\| hypothetical protein alr0799 [Nostoc sp. PCC 7120], gi\|17130144\|dbj\|BAB...	144.0	[0..30]	[136..1]
gi\|66519264 - gi\|66519264\|ref\|XP_625213.1\| PREDICTED: similar to CG14407-PA [Apis mellifera]	144.0	[0..21]	[142..3]
gi\|86605274, gi\|... - gi\|86605274\|ref\|YP_474037.1\| glutaredoxin-like protein [Synechococcus sp. JA-3-3Ab], gi\|86553816\|gb\|... gi\|86605274 - gi\|86605274\|ref\|YP_474037.1\| glutaredoxin-like protein [Cyanobacteria bacterium Yellowstone A-Prime]	144.0	[0..29]	[141..1]
gi\|22294596, gi\|... - gi\|22298417\|ref\|NP_681664.1\| hypothetical protein tll0874 [Thermosynechococcus elongatus BP-1], gi\|2...	144.0	[0..30]	[136..15]
gi\|75906814, gi\|... - gi\|75906814\|ref\|YP_321110.1\| glutaredoxin-like protein [Anabaena variabilis ATCC 29413], gi\|75700539...	143.0	[0..30]	[136..1]
gi\|187030021, gi... - gi\|39584088\|emb\|CAE66494.1\| Hypothetical protein CBG11774 [Caenorhabditis briggsae], gi\|187030021\|em... gi\|157772951 - gi\|157772951\|ref\|XP_001664540.1\| hypothetical protein CBG11774 [Caenorhabditis briggsae AF16]	143.0	[0..1]	[142..1]
gi\|77689411, gi\|... - gi\|91976238\|ref\|YP_568897.1\| glutaredoxin-like protein [Rhodopseudomonas palustris BisB5], gi\|916826...	142.0	[0..13]	[138..3]

Back

Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRVLSRQAF SMVRAANFSA SASSAGGGGL SDEVRKRIDG IVKKDDVVVF MKGTQQEPAC  60
   61 GFSRNVKLVL DFHNVKFQDY NVLTDQELRE GVKIFSEWPT IPQVYVKGEF VGGCDILISM 120
  121 HKDGEISDFL DEKGISNKYG KQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.09691
Match:	1ykaA
Description:	Solution structure of Grx4, a monothiol glutaredoxin from E. coli.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits