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View Structure Prediction Details

Protein: pha-1
Organism: Caenorhabditis elegans
Length: 491 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pha-1.

Description E-value Query
Range
Subject
Range
pha-1 - status:Confirmed UniProt:Q7YXC4 protein_id:CAD91711.1
607.0 [0..1] [491..1]

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Predicted Domain #1
Region A:
Residues: [1-232]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTPNSSCTI LFENLYDNDL ALKLFNNRTI VDNILRNVKG DINNRLELRV SHRGAFSAET  60
   61 IFSGNLVSLM PLHRSYTIFK PRLTSFQLVN KSFNLAAIHV IRKENRTVVF HKFNRCDRLH 120
  121 KISPCPDCSV HLNSVKLNKK NIFQYARFLK QTMKIMVIKI RIEDSKRVCC MITDVHQVIH 180
  181 KSLIGSDYDK VEEFVGIDQI SFSTCIPCEK IAANCKVFGP VQNDMFNAIL RL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [233-326]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KHHYDVLQVK DMRLYKLMIL NKEDPTVVED FINSNITCSK LTIFLMYMYE KEAFGYSLPR  60
   61 EFLDLLIKKW NVKTVEIVPR QDQPIPYYFH CNTD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [327-491]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FIVPKAKFYV DYWTQPRSKY TLDGVEIDLQ LTKVVEQQIK NRKSLFDNFI ANARRIFPSN  60
   61 KITVRFSKEV CQEMMSQGNV EDFISGIILM TQKDAQPNSH ISLKLYPEEV DAPLIDSFLR 120
  121 ENFEKKFDSW NLETVSDSSA NLPAEKCYQF FNQSTNCKII FYICC

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle