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View Structure Prediction Details

Protein: CE21995
Organism: Caenorhabditis elegans
Length: 375 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE21995.

Description E-value Query
Range
Subject
Range
gi|157753298 - gi|157753298|ref|XP_001680361.1| Hypothetical protein CBG07887 [Caenorhabditis briggsae AF16]
gi|39592362, gi|... - gi|39592362|emb|CAE63439.1| Hypothetical protein CBG07887 [Caenorhabditis briggsae], gi|187033129|em...
414.0 [0..1] [370..1]

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Predicted Domain #1
Region A:
Residues: [1-130]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVPRKENAE FRPIRVEDCD EYNNYANYDL SETDELNEHS RRISVEQLHP MRNKTAKKLK  60
   61 MAGKMAFRRH FDDIDTDGVN VKRNMGMRKW RRVEHARIML TFTDLDDICE DGSDIATPPT 120
  121 TAFDKLFADR 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [131-375]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ENMKLWNEFC SRDEMEQRRI LNGTSKLQQK TPDTPTTSSG SASGIVTSCS GKSPTTKKAG  60
   61 KRFSPYSGAA CFDRIDPKSR MALLGKKVNW AFVDFLEREL RNVFRIDNRN QQDTEAVFIG 120
  121 HYPASSDRLL AHIVAQWLGL SSQSITDPNL NERITEFRNR RPLIPPQTTL IDHLEARVMK 180
  181 RCIEFVPFSM RDGAQEEPVE HDLALDVDTS FLLAEEIDEL NISTASEPDR SDSEESWEKV 240
  241 QPSDA

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.48
Match: 1whrA
Description: Solution structure of the R3H domain from human hypothetical protein BAA76846
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle