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View Structure Prediction Details

Protein: CE21732
Organism: Caenorhabditis elegans
Length: 311 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE21732.

Description E-value Query
Range
Subject
Range
gi|157769389 - gi|157769389|ref|XP_001676515.1| Hypothetical protein CBG14364 [Caenorhabditis briggsae AF16]
gi|39597845, gi|... - gi|39597845|emb|CAE68537.1| Hypothetical protein CBG14364 [Caenorhabditis briggsae], gi|187027850|em...
309.0 [0..80] [304..181]

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Predicted Domain #1
Region A:
Residues: [1-76]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLLTAPLTI GLLLFILHGS CDGSPVPIGF YSQVNNDRAL YRPVGVKFKE LRLCTGEQSV  60
   61 EIVLRQLWEC KRGVCE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [77-311]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NQEWLQSETG GMQSKFSEIH VHSFWSFFNF FDNTGLNAVR LYCQRIGASN STNGSLNPIM  60
   61 SGEGADGKWG EVKWCPNGTV ITGFSLKSVP DRGPFKDDLG ATSFRVYCGN PFEGRSTKLL 120
  121 LESDKNEWGT WTGDQFCDKG FAVCGIKSQV EARAKDTTAL NNVNLHCCPV SEDVKLTSCT 180
  181 PNLVAIRIDT LDNRRGDTKL VREHLVTKSY TRTNQDTKTL SKEEKTSFYR SRLPT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.69897
Match: 1vmoA
Description: Vitelline membrane outer protein-I (VMO-I)
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle