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View Structure Prediction Details

Protein: lips-16
Organism: Caenorhabditis elegans
Length: 237 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lips-16.

Description E-value Query
Range
Subject
Range
gi|157750604 - gi|157750604|ref|XP_001679014.1| Hypothetical protein CBG13009 [Caenorhabditis briggsae AF16]
gi|39595996, gi|... - gi|39595996|emb|CAE67499.1| Hypothetical protein CBG13009 [Caenorhabditis briggsae], gi|187029025|em...
235.0 [0..5] [236..2]

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Predicted Domain #1
Region A:
Residues: [1-237]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFSILLLAL LVSSVAADFS PSFRSFINST YGPEMLAALA RTDIGDIGSY GGGSHVGNSA  60
   61 TSKRPIILVH GATNTAASFA LQRDYFMSHG WSAETVYGTT YGDGGTCVDD YDVDLGDSLT 120
  121 SIVETYVSVA GANRGSGFCV APTFTSFLAP TCNRVNGLWC ASRFIKDINE ETHYEGSKVF 180
  181 SIYGRNDDKV MFSNLCWSRS SRINGADGEM DNAPGNHDQI LSGTVEIQTQ LLEHQSF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.69897
Match: 1i6wA
Description: Lipase A
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.866238607554457 bayes_pls_golite062009
hydrolase activity 0.52702612560045 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle