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View Structure Prediction Details

Protein: lips-15
Organism: Caenorhabditis elegans
Length: 286 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lips-15.

Description E-value Query
Range
Subject
Range
gi|78066438, gi|... - gi|78066438|ref|YP_369207.1| Alpha/beta hydrolase [Burkholderia sp. 383], gi|77967183|gb|ABB08563.1|...
185.0 [0..47] [284..3]

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Predicted Domain #1
Region A:
Residues: [1-286]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVSTVLLVA ALLSTATADF SPSFRAFIQT TYGSATLNAL ARTDLGAAGS YGGGLHDGLS  60
   61 PTTRTPVILV HGTTNSAGTF APQAAYFRAN GWSEETVYAT TYGDAGVTTA TNVKMLCEYV 120
  121 QQIRNMIIAV NAFTQQKVNV IGYSMGSPIA RKAILGGKCA ENTVQLGAPL TSIIETYISV 180
  181 AGANRGTSLC DILFAPLVVP TCNTKNGLKC SSDFLTDIRS VSAYEGQYIF SIYGPSDDKV 240
  241 GFNTVCGRVS RIDGATAEKD NVPGNHDAII ANTVGATADL LTNHAF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 41.69897
Match: 1va4A
Description: Pseudomonas fluorescens aryl esterase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle