YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: col-109
Organism: Caenorhabditis elegans
Length: 291 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for col-109.

Description E-value Query
Range
Subject
Range
gi|113461768, gi... - gi|113461768|ref|YP_719837.1| large adhesin [Haemophilus somnus 129PT], gi|112823811|gb|ABI25900.1| ...
252.0 [0..45] [290..1543]

Back

Predicted Domain #1
Region A:
Residues: [1-291]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDTREKAYK AVTYSAVTFS FLAILSVCIS MPIIYNFVDS IHQQTKRDMT FCKSTARDIM  60
   61 SEISHKKPIA AAIAGNLTTI RNKRQAVGCA GCCKPGHPGR PGLPGRNGKP GVPGAPGRPG 120
  121 TPGRPPIVCE EQDVPPCNPC PPGPPGPQGP TGNSGQPGRP GNPGRPGSPG TPGPVGPNGA 180
  181 SGDSGAPGND GEKGEPGRPA QSTPSTPGEP GNPGDAGATG APGDDGAPGR DGQPGQSGPP 240
  241 GPPGPPGNVG EAGPPGKPGQ PGLPGPQGER GICPKYCALD GGVFFEDGTR R

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.154902
Match: 1y0fB
Description: No description for 1y0fB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle