YRC Public Data Repository - Protein Structure Prediction

Protein:	pqn-74
Organism:	Caenorhabditis elegans
Length:	397 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pqn-74.

Description	E-value	Query Range	Subject Range
gi\|157757607 - gi\|157757607\|ref\|XP_001671147.1\| Hypothetical protein CBG01789 [Caenorhabditis briggsae AF16] gi\|39587683, gi\|... - gi\|39587683\|emb\|CAE58621.1\| Hypothetical protein CBG01789 [Caenorhabditis briggsae], gi\|187037931\|em...	660.0	[0..1]	[397..1]

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Predicted Domain #1

Region A:
Residues: [1-254]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARFLLIIGC ATLAALASCE SKSGEETPQY WRAILGDICQ LPSFPRATGD PTRYVECVRQ  60
   61 SSFAADRKDL GIWLLRECLP GYEFVASARR CKTVRSVNKQ QELCESANAT EYNFCPTASA 120
  121 MQFLVEETRE APRQCACPNG EQNCVCPSPE ILEPISAVKK VRRSAQQQPL RFSQYPSCPC 180
  181 PQNQPACTCS TNNQQNEQIL VSISCCQQQE TTTQAPVQMQ PCQCTPTQIQ QNCQTTTTQQ 240
  241 QYCPQQSAPV VQPQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [255-397]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PCPLVQGSGV QNAQYQGICS WMIDPLATDP QSRTHYLQCQ PAPNNLFCGR WQRMPCAPGT  60
   61 VFDVQSQVCV WDTNSQPGTL PTPAPYVSTQ APQNAQCGCT GGVQIGSCNQ NYQCPGQSVC 120
  121 QVGQNAGQQC MVCCYFRKKA RRF