YRC Public Data Repository - Protein Structure Prediction

Protein:	tat-4
Organism:	Caenorhabditis elegans
Length:	239 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tat-4.

Description	E-value	Query Range	Subject Range
tat-4 - ATPase status:Partially_confirmed UniProt:Q10463 protein_id:AAD31557.1	292.0	[0..1]	[239..1216]
gi\|187037281, gi... - gi\|39597041\|emb\|CAE59268.1\| Hypothetical protein CBG02600 [Caenorhabditis briggsae], gi\|187037281\|em... gi\|157751820 - gi\|157751820\|ref\|XP_001679622.1\| Hypothetical protein CBG02600 [Caenorhabditis briggsae AF16]	275.0	[0..1]	[238..1]
gi\|13879276, gi\|... - gi\|148689216\|gb\|EDL21163.1\| testis expressed gene 264, isoform CRA_a [Mus musculus], gi\|148689215\|gb...	228.0	[0..23]	[230..27]
gi\|149018633, gi... - gi\|56090363\|ref\|NP_001007666.1\| testis expressed 264 [Rattus norvegicus], gi\|53733528\|gb\|AAH83732.1\|...	226.0	[0..23]	[230..27]
gi\|62897457, gi\|... - gi\|62897457\|dbj\|BAD96669.1\| testis expressed sequence 264 variant [Homo sapiens], gi\|62897435\|dbj\|BA...	222.0	[0..23]	[234..27]
gi\|109039347, gi... - gi\|109039359\|ref\|XP_001096203.1\| PREDICTED: similar to Testis expressed sequence 264 protein precurs...	218.0	[0..23]	[234..27]
gi\|73985584 - gi\|73985584\|ref\|XP_533810.2\| PREDICTED: similar to Testis expressed sequence 264 protein precursor (...	213.0	[0..23]	[234..27]
gi\|81674089, gi\|... - gi\|84000313\|ref\|NP_001033258.1\| testis expressed sequence 264 [Bos taurus], gi\|81674089\|gb\|AAI09795....	208.0	[0..23]	[234..27]

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Predicted Domain #1

Region A:
Residues: [1-239]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFELAFIAVL VAGAVYVFMT LRKNGFFVTV EPSVTTSPKN LDKPLTVYYK YHLGPYQNVM  60
   61 NVIGEAKQLL ASSPTPATFF GIYYDNPEVT DSHFLQSAVG VVFGSDGNDF HSEKYSKDLT 120
  121 DNGFEKLVLP NVERAVQVTQ PSTGGFASFL ALVWFTYSTI RKYISENKLE TTYAVEFYTN 180
  181 TEINVIFPLD NANEFLVKDY QSIDKLESEA AKKRFDSSEE DSESEPEGAE EPATEENEQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.154902
Match:	1jyhA
Description:	Gyrase inhibitory protein GyrI (SbmC, YeeB)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits