YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE21143
Organism: Caenorhabditis elegans
Length: 181 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE21143.

Description E-value Query
Range
Subject
Range
CE21354 - status:Partially_confirmed UniProt:Q9N2S5 protein_id:AAF60927.1
248.0 [0..9] [181..45]

Back

Predicted Domain #1
Region A:
Residues: [1-181]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHLLLIALAL LSTAGAEYVH YPSNGCTRHN VMNGFQLKFE GPQGIFKNDH GVVSISFFCN  60
   61 PPDGLTNDAI SNKLVVKPEL PFGHWREIQW CPNGTVIIGI QTKSDRGRID KAGITNFAAK 120
  121 CGRPEVRTGT ETWAWENLDT FGGWDKEINC PVGEAMYRFR ANIARGRGLF KFTHFSCNKV 180
  181 E

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 39.39794
Match: 1vmoA
Description: Vitelline membrane outer protein-I (VMO-I)
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle