YRC Public Data Repository - Protein Structure Prediction

Protein:	vem-1
Organism:	Caenorhabditis elegans
Length:	198 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vem-1.

Description	E-value	Query Range	Subject Range
gi\|25513778 - gi\|25513778\|pir\|\|H89582 protein K07E3.6 [imported] - Caenorhabditis elegans	211.0	[0..14]	[198..780]
gi\|187026266, gi... - gi\|39594239\|emb\|CAE70349.1\| Hypothetical protein CBG16897 [Caenorhabditis briggsae], gi\|187026266\|em... gi\|157770780 - gi\|157770780\|ref\|XP_001677210.1\| Hypothetical protein CBG16897 [Caenorhabditis briggsae AF16]	197.0	[0..16]	[198..1]
PGRC2_MOUSE - Membrane-associated progesterone receptor component 2 OS=Mus musculus GN=Pgrmc2 PE=1 SV=2	178.0	[0..7]	[178..31]
PGRC2_RAT - Membrane-associated progesterone receptor component 2 OS=Rattus norvegicus GN=Pgrmc2 PE=1 SV=1	178.0	[0..7]	[178..31]
gi\|220953468, gi... - gi\|220953468\|gb\|ACL89277.1\| CG9066-PA [synthetic construct], gi\|220943238\|gb\|ACL84162.1\| CG9066-PA [... MSBP-PB, MSBP-PA... - The gene membrane steroid binding protein is referred to in FlyBase by the symbol Dmel\MSBP (CG9066,...	168.0	[0..26]	[198..39]
gi\|61859954 - gi\|61859954\|ref\|XP_613630.1\| PREDICTED: similar to progesterone membrane binding protein [Bos taurus...	162.0	[0..16]	[178..70]
gi\|109075624 - gi\|109075624\|ref\|XP_001082791.1\| PREDICTED: similar to progesterone membrane binding protein [Macaca...	160.0	[0..23]	[178..77]
gi\|57100531 - gi\|57100531\|ref\|XP_533292.1\| PREDICTED: similar to progesterone membrane binding protein [Canis fami...	158.0	[0..23]	[178..53]

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Predicted Domain #1

Region A:
Residues: [1-198]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYTVSVTFLH KSFFTMDLSS WFEFTMYDAV FLVVVLGFFF YWLTRSEQPL PAPPKELAPL  60
   61 PMSDMTVEEL RKYDGVKNEH ILFGLNGTIY DVTRGKGFYG PGKAYGTLAG HDATRALGTM 120
  121 DQNAVSSEWD DHTGISADEQ ETANEWETQF KFKYLTVGRL VKNSSEKADY GNRKSFVRGA 180
  181 ESLDSIINGG DEGTKKDN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.221849
Match:	1t0gA
Description:	Hypothetical protein At2g24940.1 from Arabidopsis thaliana has a cytochrome b5 like fold
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits