YRC Public Data Repository - Protein Structure Prediction

Protein:	CE20889
Organism:	Caenorhabditis elegans
Length:	254 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE20889.

Description	E-value	Query Range	Subject Range
gi\|12642614 - gi\|12642614\|gb\|AAK00311.1\|AF315821_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monosiga ...	158.0	[0..3]	[221..1511]
gi\|3511287, gi\|7... - pir\|\|T31670 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - Mastigamoeba invertens (frag...	152.0	[0..2]	[254..1428]
gi\|83767526, gi\|... - gi\|9955855\|dbj\|BAB12227.1\| RNA polymerase II largest subunit [Aspergillus oryzae], gi\|83767526\|dbj\|B... gi\|169770395 - gi\|169770395\|ref\|XP_001819667.1\| hypothetical protein [Aspergillus oryzae RIB40]	135.0	[0..7]	[216..1521]
gi\|54291834, gi\|... - gi\|54291834\|gb\|AAV32202.1\| putative RNA polymerase II [Oryza sativa Japonica Group], gi\|50949135\|ref...	135.0	[0..1]	[171..1437]
gi\|73955449 - gi\|73955449\|ref\|XP_858007.1\| PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A ...	134.0	[0..72]	[220..1707]
gi\|7494579 - gi\|7494579\|pir\|\|T29959 DNA-directed RNA polymerase II large subunit ama-1 - Caenorhabditis elegans	132.0	[0..100]	[244..1691]

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Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGSVRVLVL LLAFIVTASA IGYSGGGYQP HSCDGDWPEK FPEAPKGFQF RCKCPCKCPP  60
   61 KSPTTTSIST STVSTTPERL TKPYEETDTP IPTHSSPSTS TSTSTSTSTS TSTSRSTSTV 120
  121 TPTTRSSTTT TATSTPTSSS KATTTSAQIT QPEIPQAAPG TV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.16
Match:	2j63A
Description:	No description for 2j63A was found.

Predicted Domain #2

Region A:
Residues: [163-254]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LKGEEFPVKQ DGLGDGGVVH GPGTTFWIRS PTPPNIPLLV GGQSRLATVR PDSPYASDAA  60
   61 LNPLNGGAGD MEFGIKNVGT PKTPRAVINP DA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits