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View Structure Prediction Details

Protein: CE20837
Organism: Caenorhabditis elegans
Length: 146 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE20837.

Description E-value Query
Range
Subject
Range
gi|47208124 - gi|47208124|emb|CAF91031.1| unnamed protein product [Tetraodon nigroviridis]
138.0 [0..2] [135..64]

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Predicted Domain #1
Region A:
Residues: [1-146]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSETLIIRFN VGGTPMATLK TTFPVDSIFH KWFVSRTKAS PFTSDRDGAY FVDRDPFSFG  60
   61 VVLNYFRLRK AGQLWEACLP KDPDRLAMLT QEADFFLLPQ LRDQAICMLQ LCSNKNDSNY 120
  121 INEMLAKSTS CPQGFDKKEE EDEEDF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.0
Match: 2a79B
Description: Mammalian Shaker Kv1.2 potassium channel- beta subunit complex
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle