YRC Public Data Repository - Protein Structure Prediction

Protein:	CE20813
Organism:	Caenorhabditis elegans
Length:	139 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE20813.

Description	E-value	Query Range	Subject Range
gi\|113460623, gi... - gi\|113460623\|ref\|YP_718689.1\| cell-surface large adhesin [Haemophilus somnus 129PT], gi\|112822666\|gb...	158.0	[0..5]	[137..1204]
gi\|91083753 - gi\|91083753\|ref\|XP_971465.1\| PREDICTED: similar to Tubulin tyrosine ligase-like protein 2 (Testis-sp...	123.0	[0..5]	[138..346]
gi\|47217441 - gi\|47217441\|emb\|CAG10210.1\| unnamed protein product [Tetraodon nigroviridis]	117.0	[0..9]	[115..470]
gi\|23128642, gi\|... - gi\|23128642\|ref\|ZP_00110483.1\| hypothetical protein Npun02007810 [Nostoc punctiforme PCC 73102], gi\|...	117.0	[0..5]	[137..412]
gi\|114584077 - gi\|114584077\|ref\|XP_001153230.1\| PREDICTED: alpha 3 type VI collagen isoform 1 [Pan troglodytes]	110.0	[0..4]	[138..2009]
CO6A1_CHICK - Collagen alpha-1(VI) chain OS=Gallus gallus GN=COL6A1 PE=2 SV=1	104.0	[0..5]	[137..387]
gi\|76667061 - gi\|76667061\|ref\|XP_588755.2\| PREDICTED: similar to Collagen alpha 1(VI) chain precursor isoform 1 [B...	102.0	[0..13]	[132..436]
CO6A2_MOUSE - Collagen alpha-2(VI) chain OS=Mus musculus GN=Col6a2 PE=1 SV=3	102.0	[0..9]	[129..269]

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Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRLYVIALL VLFTSHAFAV TSWSSVSTNG LNTVGSYGTV GGAGLGGPGI GGPGLGGPGI  60
   61 GGPGLGGPGV GGGPGAFGPY GRYGGGGYGG YGRYGRYGRY GGYGGYGGYG GPGYGGGPGP 120
  121 HHHHHHHGPP PPPYYGRPF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.30103
Match:	1y0fB
Description:	No description for 1y0fB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits