YRC Public Data Repository - Protein Structure Prediction

Protein:	CE20695
Organism:	Caenorhabditis elegans
Length:	279 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE20695.

Description	E-value	Query Range	Subject Range
OPSD_BOVIN - Rhodopsin OS=Bos taurus GN=RHO PE=1 SV=1 gi\|18148871 - gi\|18148871\|dbj\|BAB83621.1\| rhodopsin [synthetic construct]	179.0	[0..1]	[276..1]
gi\|5931796 - gi\|5931796\|emb\|CAB56646.1\| rod opsin [Anguilla japonica]	179.0	[0..1]	[276..1]
gi\|24106630, gi\|... - gi\|28278817\|gb\|AAH45288.1\| Rho protein [Danio rerio], gi\|24106630\|dbj\|BAC21668.1\| rod opsin [Danio r...	178.0	[0..1]	[276..1]
OPSD2_ANGAN - Rhodopsin, freshwater form OS=Anguilla anguilla PE=1 SV=1	178.0	[0..1]	[276..1]
OPSD_RABIT - Rhodopsin OS=Oryctolagus cuniculus GN=RHO PE=1 SV=1	178.0	[0..1]	[276..1]
gi\|73953906 - gi\|73953906\|ref\|XP_853735.1\| PREDICTED: similar to Opsin-4 (Melanopsin) [Canis familiaris]	177.0	[0..20]	[267..86]
OPSD_CALPD - Rhodopsin OS=Caluromys philander GN=RHO PE=1 SV=1	176.0	[0..1]	[276..1]

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Predicted Domain #1

Region A:
Residues: [1-279]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSSKATDYV VPEEFRGDAW LKFSSWINSI SAYLYLTDFI ISFIGIFPSL FHFWILTRTY  60
   61 MRHLTTNLFL IGITVCGIIH IICNIIEFFP MLYDYYLSFK VPSECFPFAP YSKIVSNYYS 120
  121 SMTNAVVTGM LTYFTVAMAI IRFLVVKFPL ASGMQRLIYS KSGLKILLPI IILILPLWIA 180
  181 EISSTNIVET GIWVPGPNCD GFAENYTEKM YTVETSITFG IDEFYWIVYY IYAVIFQFIP 240
  241 SILLPISTVL LIIELKKNKK TTTWTSKRQF SGKSTNCRN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.0
Match:	1f88A
Description:	Rhodopsin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits