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View Structure Prediction Details

Protein: col-107
Organism: Caenorhabditis elegans
Length: 294 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for col-107.

Description E-value Query
Range
Subject
Range
gi|113461768, gi... - gi|113461768|ref|YP_719837.1| large adhesin [Haemophilus somnus 129PT], gi|112823811|gb|ABI25900.1| ...
281.0 [0..35] [293..1399]

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Predicted Domain #1
Region A:
Residues: [1-294]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTKAIVIGA SFFSGVTIIV SLVAAGMLLQ DINDLYYDVM DDMTEFRNTA NEAWKDMIVP  60
   61 SGAVDASLIF GRNKRSGGTC GCGAQPNNCP AGPAGPPGAP GAPGEDGTPG QAGKNGGNGI 120
  121 GIVNSADAGG CIKCPAGEPG PAGPDGPAGA PGADGQPGAP GNAGQDGAPG AAGEQGDAGA 180
  181 AGQDGEAGAP GGPGKNGQRG SGAPGPAGPE GPAGPAGQDG APGQDGAPGN AGSEGPAGAP 240
  241 GKDGEAGAPG QDGEAGGEGI PGQDAAYCPC PPRTAAVEAT PASQGGYRRR FSHV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 31.522879
Match: 1y0fB
Description: No description for 1y0fB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle