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View Structure Prediction Details

Protein: cka-1
Organism: Caenorhabditis elegans
Length: 474 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cka-1.

Description E-value Query
Range
Subject
Range
gi|39598314, gi|... - gi|39598314|emb|CAE69007.1| Hypothetical protein CBG15000 [Caenorhabditis briggsae], gi|187027426|em...
gi|157755117 - gi|157755117|ref|XP_001669902.1| Hypothetical protein CBG15000 [Caenorhabditis briggsae AF16]
345.0 [0..4] [474..1]

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Predicted Domain #1
Region A:
Residues: [1-474]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRLSSILVF HFLRRNLKTS SKFVRRMVSL EVPTESPCIS RRAPSEECEI AFSHDDPTLM  60
   61 WKDRTTDCVD LKKVFSKFDS SAPISGEILF RARFLCAKYL GGAWRKVKIE EFRIRAITGG 120
  121 MSNLLFLVEL PAHLTPIQME PEKALLRVHC QSDIDQLLSE SVVFTLLSER NLGPKMLGVF 180
  181 PGGRFEQFIP SRALQCLEIS KPGLSKLIAP IVARVHTLDA PIPKEPQTLQ TARQWLERFK 240
  241 KTPAGERPIE MYLTQAKVPK SDYPSTITVA QLERELNFVE FFLQHSHSPV VFSHNDLQEG 300
  301 NFLLIDGYKL ADDGTVLTPD GKPTNDDPLS LIDFEYCSYN YRGFDLGNHF CEYGYDYNEA 360
  361 EAPYYKIHQH YFEVEKERKV FCEAYLDEVY KMRACGDNPH FPSDLVTGDR EKDLNKIIEE 420
  421 SILFMPVSNI FWVCWSLINA EESSIAFDYG AYGRDRLALY FHQKKNLEKY LSNL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 73.221849
Match: 2ig7A
Description: No description for 2ig7A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle