YRC Public Data Repository - Protein Structure Prediction

Protein:	rpl-30
Organism:	Caenorhabditis elegans
Length:	113 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpl-30.

Description	E-value	Query Range	Subject Range
gi\|94394262, gi\|... - gi\|94394262\|ref\|XP_980411.1\| PREDICTED: similar to ribosomal protein L30 [Mus musculus], gi\|94393498...	160.0	[0..1]	[112..47]
gi\|62901830 - gi\|62901830\|gb\|AAY18866.1\| RPL30 [synthetic construct]	155.0	[0..2]	[112..13]
gi\|73955920 - gi\|73955920\|ref\|XP_851334.1\| PREDICTED: similar to ribosomal protein L30 [Canis familiaris]	154.0	[0..1]	[112..1]
gi\|197127743, gi... - gi\|197127744\|gb\|ACH44242.1\| putative ribosomal protein L30 [Taeniopygia guttata], gi\|197127743\|gb\|AC... gi\|86355135 - gi\|86355135\|dbj\|BAE78802.1\| ribosomal protein L30 [Pelodiscus sinensis] RL30_OPHHA - 60S ribosomal protein L30 OS=Ophiophagus hannah GN=RPL30 PE=3 SV=2 RL30_CHICK - 60S ribosomal protein L30 OS=Gallus gallus GN=RPL30 PE=3 SV=2	153.0	[0..1]	[113..1]
RL30_MOUSE - 60S ribosomal protein L30 OS=Mus musculus GN=Rpl30 PE=1 SV=2 gi\|194037009, gi... - gi\|194037009\|ref\|XP_001929027.1\| PREDICTED: similar to ribosomal protein L30 isoform 1 [Sus scrofa],... gi\|187609332 - gi\|187609332\|pdb\|2ZKR\|6 Chain 6, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Comple... gi\|109087033, gi... - gi\|109087035\|ref\|XP_001094073.1\| PREDICTED: similar to ribosomal protein L30 isoform 3 [Macaca mulat... RL30_RAT - 60S ribosomal protein L30 OS=Rattus norvegicus GN=Rpl30 PE=3 SV=2 ENSCJAT00000030258 - null RPL30 - ribosomal protein L30 RL30_MACFA - 60S ribosomal protein L30 OS=Macaca fascicularis GN=RPL30 PE=3 SV=3 RL30_BOVIN - 60S ribosomal protein L30 OS=Bos taurus GN=RPL30 PE=3 SV=3 gi\|114621048, gi... - gi\|55631002\|ref\|XP_519874.1\| PREDICTED: similar to ribosomal protein L30 isoform 10 [Pan troglodytes... gi\|61359038 - gi\|61359038\|gb\|AAX41659.1\| ribosomal protein L30 [synthetic construct] gi\|149721564 - gi\|149721564\|ref\|XP_001491200.1\| PREDICTED: similar to ribosomal protein L30 [Equus caballus]	153.0	[0..1]	[112..1]
gi\|52346132, gi\|... - gi\|52346132\|ref\|NP_001005110.1\| MGC89963 protein [Xenopus (Silurana) tropicalis], gi\|49903584\|gb\|AAH...	153.0	[0..1]	[113..1]
gi\|67764180 - gi\|67764180\|gb\|AAY79221.1\| 60S ribosomal protein L30 [Siniperca chuatsi] gi\|182636876 - gi\|182636876\|gb\|ACB97649.1\| 60S ribosomal protein L30 [Paralichthys olivaceus]	153.0	[0..1]	[111..1]

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Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPAAKPQKN AENINSRLSM VMKTGQYVLG YKQTLKSLLN GKAKLVIIAN NTPPLRKSEI  60
   61 EYYAMLAKTG VHHYNGNNIE LGTACGRLFR VCTLAVTDAG DSDIILSVPS ESA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.221849
Match:	1yshC
Description:	Localization and dynamic behavior of ribosomal protein L30e
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits