YRC Public Data Repository - Protein Structure Prediction

Protein:	CE20408
Organism:	Caenorhabditis elegans
Length:	206 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE20408.

Description	E-value	Query Range	Subject Range
gi\|157746941 - gi\|157746941\|ref\|XP_001668565.1\| Hypothetical protein CBG12218 [Caenorhabditis briggsae AF16] gi\|39589611, gi\|... - gi\|39589611\|emb\|CAE66846.1\| Hypothetical protein CBG12218 [Caenorhabditis briggsae], gi\|187029667\|em...	216.0	[0..1]	[204..1]
gi\|27364918, gi\|... - gi\|27364918\|ref\|NP_760446.1\| 5-formyltetrahydrofolate cyclo-ligase [Vibrio vulnificus CMCP6], gi\|273... gi\|37681033, gi\|... - gi\|37681033\|ref\|NP_935642.1\| 5-formyltetrahydrofolate cyclo-ligase [Vibrio vulnificus YJ016], gi\|371...	215.0	[0..3]	[201..1]
gi\|74196670 - gi\|74196670\|dbj\|BAE34435.1\| unnamed protein product [Mus musculus]	215.0	[0..3]	[198..5]
gi\|24372363, gi\|... - gi\|24372363\|ref\|NP_716405.1\| 5-formyltetrahydrofolate cyclo-ligase family protein [Shewanella oneide... SO0774 - 5-formyltetrahydrofolate cyclo-ligase family protein	213.0	[0..3]	[203..31]
gi\|84376740, gi\|... - gi\|84390086\|ref\|ZP_00991348.1\| putative 5-formyltetrahydrofolate cyclo-ligase-family protein [Vibrio...	212.0	[0..3]	[201..1]
gi\|56541204, gi\|... - gi\|57164141\|ref\|NP_001009349.1\| 5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate c...	212.0	[0..3]	[198..5]
gi\|71280724, gi\|... - gi\|71280724\|ref\|YP_270316.1\| 5-formyltetrahydrofolate cyclo-ligase family protein [Colwellia psychre...	212.0	[0..7]	[203..3]
gi\|254230209, gi... - gi\|75853743\|ref\|ZP_00761514.1\| COG0212: 5-formyltetrahydrofolate cyclo-ligase [Vibrio sp. Ex25], gi\|...	212.0	[0..1]	[201..1]
gi\|86146375, gi\|... - gi\|86146375\|ref\|ZP_01064699.1\| putative 5-formyltetrahydrofolate cyclo-ligase-family protein [Vibrio...	212.0	[0..3]	[201..1]

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Predicted Domain #1

Region A:
Residues: [1-206]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAIKEVKSE LRQFMKTLLG KISKEETQRQ TEAVFEKIIE SKWFQESKRL SVYVSTSGEI  60
   61 QTDSIIQKAL EMGKEVFIPQ FTKGSTAMDM VRVPDQTAFD NLPSTLWGIR QPEPKWKWQS 120
  121 YHETGPLDLI LAPGVAFSPY GLRCGHGKGY YDRFFSTHHK HFPENSPKKI GLALREQIIG 180
  181 TIPISETDVE LDEVIYEGET IIFDTI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.522879
Match:	1ydmA
Description:	X-Ray structure of Northeast Structural Genomics target SR44
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits