YRC Public Data Repository - Protein Structure Prediction

Protein:	tac-1
Organism:	Caenorhabditis elegans
Length:	260 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tac-1.

Description	E-value	Query Range	Subject Range
epi-1 - laminin status:Confirmed UniProt:Q21313 protein_id:CAA94293.1	158.0	[0..4]	[257..2405]
gi\|28933422 - gi\|28933422\|gb\|AAO62630.1\| transforming acidic coiled coil 2, long isoform [Homo sapiens]	154.0	[0..22]	[250..2727]
gi\|114633105 - gi\|114633105\|ref\|XP_001158836.1\| PREDICTED: transforming, acidic coiled-coil containing protein 2 is...	147.0	[0..22]	[250..2710]
gi\|73998930 - gi\|73998930\|ref\|XP_535042.2\| PREDICTED: similar to transforming, acidic coiled-coil containing prote...	146.0	[0..22]	[250..2664]
gi\|109090781 - gi\|109090781\|ref\|XP_001102544.1\| PREDICTED: similar to transforming, acidic coiled-coil containing p...	143.0	[0..22]	[250..2719]
gi\|52486810 - gi\|52486810\|ref\|NP_001004415.1\| transforming acidic coiled coil 2 isoform 1 [Rattus norvegicus]	141.0	[0..43]	[250..2632]

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Predicted Domain #1

Region A:
Residues: [1-260]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLNTTFTKE DGTEVVIPFN GSQNGHPENE EPEVEEAAEP SSSVETLCGA TRGDIIVMKH  60
   61 TTKALTELIE RLLHSDEFEV RRCSNGQIIS QGRCNGTTPG NGIGGGGASS EELEKALKDR 120
  121 DAARAEADKL HANYATLFAS FNTVREAAND IRGEYEDARD KLKLAAAEVD EWQAKFLAVK 180
  181 DNANSELERA SVEYDDLLRS HDENTKGLRL RVKRQEIELS SKNDEIKVLT NRVSELSQIC 240
  241 DQLLNDVDVS DGMSVISTDA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.0
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits