YRC Public Data Repository - Protein Structure Prediction

Protein:	CE20285
Organism:	Caenorhabditis elegans
Length:	215 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE20285.

Description	E-value	Query Range	Subject Range
gi\|39591210, gi\|... - gi\|39591210\|emb\|CAE73263.1\| Hypothetical protein CBG20679 [Caenorhabditis briggsae], gi\|187022968\|em... gi\|157752504 - gi\|157752504\|ref\|XP_001679964.1\| Hypothetical protein CBG20679 [Caenorhabditis briggsae AF16]	262.0	[0..23]	[215..1]
CE20284 - status:Confirmed UniProt:Q9XWJ6 protein_id:CAA21667.1	260.0	[0..23]	[215..1]
NDUB8_BOVIN - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial OS=Bos taurus GN=NDUFB8 P...	247.0	[0..17]	[210..2]
gi\|187469737, gi... - gi\|62642368\|ref\|XP_215269.3\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 beta subcomplex...	246.0	[0..17]	[210..2]
gi\|124000217, gi... - gi\|124000217\|gb\|ABM87617.1\| NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa [synthetic c... NDUFB8 - NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa	244.0	[0..17]	[210..2]
NDUB8_PANTR - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial OS=Pan troglodytes GN=NDU...	243.0	[0..17]	[210..2]
gi\|57107249 - gi\|57107249\|ref\|XP_534992.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 beta subcomplex...	241.0	[0..17]	[210..2]

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Predicted Domain #1

Region A:
Residues: [1-215]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPADRSIWQE SCPVSFSALK KWIFLPNSTK IKEKRSSFPV RGPLTFDGWY PRDHKPSAPP  60
   61 TNEEERRAAA VKYGLRPEDY QSMDKDDVIK FAGDYPDLGV ITYDHKDPYE AWTDRQNRRN 120
  121 WGELVPIDMM RYRGDRLTFT GLEAEDYTTW NSIVMCLRVL VPMALLAWYF TNEHPNALRW 180
  181 KNPAMPKQYS YDFYRAYPFD DPRKYPIVNY SFDLE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits