YRC Public Data Repository - Protein Structure Prediction

Protein:	CE20214
Organism:	Caenorhabditis elegans
Length:	180 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE20214.

Description	E-value	Query Range	Subject Range
gi\|50731377 - gi\|50731377\|ref\|XP_417247.1\| PREDICTED: similar to Microsomal signal peptidase 25 kDa subunit (SPase...	257.0	[0..3]	[180..139]
gi\|40787675 - gi\|40787675\|gb\|AAH64957.1\| SPCS2 protein [Homo sapiens]	248.0	[0..3]	[180..42]
SPCS2_PONAB - Signal peptidase complex subunit 2 OS=Pongo abelii GN=SPCS2 PE=2 SV=1 SPCS2_PONPY - Signal peptidase complex subunit 2 - Pongo pygmaeus (Orangutan)	248.0	[0..3]	[180..42]
gi\|109075548 - gi\|109075548\|ref\|XP_001101980.1\| PREDICTED: similar to Signal peptidase complex subunit 2 (Microsoma...	248.0	[0..3]	[180..42]
SPCS2_CANLF - Signal peptidase complex subunit 2 OS=Canis lupus familiaris GN=SPCS2 PE=1 SV=1	248.0	[0..3]	[180..42]
gi\|47216502 - gi\|47216502\|emb\|CAG02153.1\| unnamed protein product [Tetraodon nigroviridis]	247.0	[0..3]	[180..18]
gi\|114639385 - gi\|114639385\|ref\|XP_001174940.1\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]	247.0	[0..3]	[180..42]

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Predicted Domain #1

Region A:
Residues: [1-180]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDEPVKVVN KWDGPTVKNA LDEVVKKILN DKVGWTESHN LMNLRLLISF IGVAFSAFAC  60
   61 GYDYYEPFPK SKIVLAVCSV SYFICMGILQ MYQWYVEKDC IYEATEVDGK QSRKWAWSSE 120
  121 IKAHDDKYTL SAEFKKEGRS GQGKITKSIG AYIDNDGEII VPLVKKEVDD LYNRLIRSEQ 180
  181

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	116.251812
Match:	PF06703.2
Description:	No description for PF06703.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits