YRC Public Data Repository - Protein Structure Prediction

Protein:	CE20192
Organism:	Caenorhabditis elegans
Length:	297 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE20192.

Description	E-value	Query Range	Subject Range
gi\|39598363, gi\|... - gi\|39598363\|emb\|CAE69056.1\| Hypothetical protein CBG15066 [Caenorhabditis briggsae], gi\|187027475\|em... gi\|157755215 - gi\|157755215\|ref\|XP_001669951.1\| Hypothetical protein CBG15066 [Caenorhabditis briggsae AF16]	358.0	[0..1]	[297..1]
gi\|42551191, gi\|... - gi\|46123383\|ref\|XP_386245.1\| hypothetical protein FG06069.1 [Gibberella zeae PH-1], gi\|42551191\|gb\|E...	293.0	[0..28]	[296..3]
gi\|73988065 - gi\|73988065\|ref\|XP_542334.2\| PREDICTED: similar to FGF receptor activating protein 1 isoform 1 [Cani...	290.0	[0..15]	[279..3]
gi\|116206108, gi... - gi\|88182944\|gb\|EAQ90412.1\| hypothetical protein CHGG_02347 [Chaetomium globosum CBS 148.51], gi\|1162...	290.0	[0..28]	[296..4]
gi\|119622973, gi... - gi\|34576987\|gb\|AAQ75733.1\| FGF receptor activating protein 1 isoform [Homo sapiens], gi\|119622977\|gb...	289.0	[0..15]	[279..3]
gi\|114635713 - gi\|114635713\|ref\|XP_001159267.1\| PREDICTED: FGF receptor activating protein 1 isoform 3 [Pan troglod...	289.0	[0..15]	[279..3]
gi\|74194586 - gi\|74194586\|dbj\|BAE37322.1\| unnamed protein product [Mus musculus]	288.0	[0..15]	[279..12]
gi\|114193242, gi... - gi\|115396068\|ref\|XP_001213673.1\| calcofluor white hypersensitive protein precursor [Aspergillus terr...	287.0	[0..28]	[293..3]
PGAP2_BOVIN - Post-GPI attachment to proteins factor 2 OS=Bos taurus GN=PGAP2 PE=2 SV=1	286.0	[0..15]	[279..3]
PGAP2_RAT - Post-GPI attachment to proteins factor 2 OS=Rattus norvegicus GN=Pgap2 PE=2 SV=1	285.0	[0..15]	[279..3]

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Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSPASTVEK GVRRRLPPPL NRMGLFEPYI KDGKKITEIV RLNPVEVFLA GFIPPMFGSI  60
   61 SAIAIALIFH NDEISNYNWQ CGR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [84-194]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ARLPSLSRII NLPVERTFWQ LFLLFHVPIR VVELITGFSR YKRMRNVNYK RVWLYELSRY  60
   61 LYFVVGLLEL IFLSGLSIIG ERENIQVHVI FFYVFGICGI VHMISNIFCH A

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [195-297]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HSLYYLNPYG RLSYYLKILF TSLYVLSTPI LIASFILYWR KCITWAYDVF ALCEYSGVFL  60
   61 NICFHGCAFF DIRYKVTFSV RKIEDVVQNE PNKQAIEALP EKH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits