YRC Public Data Repository - Protein Structure Prediction

Protein:	tni-3
Organism:	Caenorhabditis elegans
Length:	260 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tni-3.

Description	E-value	Query Range	Subject Range
gi\|50761252 - gi\|50761252\|ref\|XP_419242.1\| PREDICTED: similar to troponin I slow skeletal muscle isoform [Gallus g...	175.0	[0..23]	[221..228]
gi\|109732781 - gi\|109732781\|gb\|AAI16186.1\| ITSN1 protein [Homo sapiens]	161.0	[0..2]	[259..372]
gi\|114683967 - gi\|114683967\|ref\|XP_531442.2\| PREDICTED: intersectin 1 isoform 5 [Pan troglodytes]	161.0	[0..2]	[259..372]
gi\|74001183 - gi\|74001183\|ref\|XP_857836.1\| PREDICTED: similar to intersectin 1 isoform ITSN-l isoform 9 [Canis fam...	160.0	[0..2]	[259..372]

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Predicted Domain #1

Region A:
Residues: [1-260]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLIEDENIRY GGAQADVEDD AARKAQEREL KKAEVRKRME EAAKKGSKKK GFLTPERKKK  60
   61 LRKLLMMKAA EDLKQQQMLK EQERQKTLQQ RTIPLPDVDS INDQGQLLKI YEDMFARVCA 120
  121 LEEEKFDINF GVSQTEAEIN QLTIQVNDLR GKFVKPTLKK VSKYDNKFKS SGEVKEKSNF 180
  181 RNNLKVVKKE TDLDEIMAKK KGTADGKPEW SKKEKKEEEA APVELAAPVE PEAEPEPEAA 240
  241 EPAAEEPEAE EEEEEEEEEE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.69897
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits