YRC Public Data Repository - Protein Structure Prediction

Protein:	pqn-68
Organism:	Caenorhabditis elegans
Length:	150 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pqn-68.

Description	E-value	Query Range	Subject Range
gi\|18676870 - gi\|18676870\|dbj\|BAB85044.1\| unnamed protein product [Homo sapiens]	241.0	[0..1]	[148..1]
gi\|114681167 - gi\|114681167\|ref\|XP_514535.2\| PREDICTED: similar to Probable D-tyrosyl-tRNA(Tyr) deacylase [Pan trog...	240.0	[0..1]	[148..97]
gi\|109093075 - gi\|109093075\|ref\|XP_001089216.1\| PREDICTED: similar to Probable D-tyrosyl-tRNA(Tyr) deacylase [Macac...	240.0	[0..1]	[148..81]
gi\|24899807, gi\|... - gi\|24899807\|gb\|AAN65118.1\| RNA helicase - like protein [Arabidopsis thaliana], gi\|22328775\|ref\|NP_19...	240.0	[0..1]	[149..1]
DTD_THEAQ - D-aminoacyl-tRNA deacylase OS=Thermus aquaticus GN=dtd PE=3 SV=2	237.0	[0..1]	[150..1]
gi\|115951366, gi... - gi\|72081196\|ref\|XP_796744.1\| PREDICTED: similar to Probable D-tyrosyl-tRNA(Tyr) deacylase [Strongylo...	237.0	[0..1]	[148..1]
DTD_GEOKA - D-aminoacyl-tRNA deacylase OS=Geobacillus kaustophilus (strain HTA426) GN=dtd PE=3 SV=1 DTD_GEOKA - D-tyrosyl-tRNA(Tyr) deacylase OS=Geobacillus kaustophilus GN=dtd PE=3 SV=1	237.0	[0..1]	[150..1]

Back

Predicted Domain #1

Region A:
Residues: [1-150]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVVLQRVTR AAVTVGDEVV GSIGRGLCVL VGVHRDDTEE DMKYIIRKIL NLRVFPASEQ  60
   61 KPWDKSVMDL DLEVLSVSQF TLYGQFKGNK LDFHTAMAPT EASKFYASFL EAMKKAYKAD 120
  121 KIQDGKFAAM MSVDIVNDGP VTVTFDSKEK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	62.69897
Match:	2okvA
Description:	No description for 2okvA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits