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View Structure Prediction Details

Protein: CE19876
Organism: Caenorhabditis elegans
Length: 518 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE19876.

Description E-value Query
Range
Subject
Range
CE24834 - WBGene00008014 status:Partially_confirmed TR:Q9U3N1 protein_id:CAB63437.1
371.0 [0..1] [517..1]

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Predicted Domain #1
Region A:
Residues: [1-211]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDESPSIYFR GNCISTTCTG LRGPNYDRKC YGAPPNVGYV NETSIMPRPI SQGAVTIPNS  60
   61 QIAIRTCILY EHLHGKTVTE AYENFCRKVG NGVIDFRSFG FWFDRFRTGN HDLGYDIDSE 120
  121 LEPRSLAEMH KDIMRNILRE LNSEPTKPVT DLVKPFENNR KVLWGYIYFE CSQSNSIFEA 180
  181 YEKMCETVGK NAVKYWEFEY WYQKIKAGDS S

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [212-293]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESDIDFDKE IRSLSAMPID IVGEIMNKLK LEEKLLMRKV SKSLRGFMDK LNIGVEKISL  60
   61 KIYNTTSVLQ FDEKEVIYQN RK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [294-518]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DNCKVLYDNQ EKLVKGGKYA IMALHDWSMV MKNQKLKLKE LQFTLDVDLG DHQKLYKTIK  60
   61 TVLENSSYLN VEKITLEGFS VREIIKILQH CKSRTLEEIV LGSLTDNNYI EKLVDMKQWK 120
  121 EARVFESSRN CIMALPIVHL LHFSKFDVSM PVSEFGAMLI RNQLLKSSNF ERGCFRMLNY 180
  181 DPMKILNVFE QNYSGGTSGS ITYNDEESEF RIHFDTMNFE IIKCI

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 45.60206
Match: PF01827.18
Description: No description for PF01827.18 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle