YRC Public Data Repository - Protein Structure Prediction

Protein:	CE19849
Organism:	Caenorhabditis elegans
Length:	63 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE19849.

Description	E-value	Query Range	Subject Range
gi\|62901856 - gi\|62901856\|gb\|AAY18879.1\| COX17 [synthetic construct]	86.0	[0..2]	[63..26]
gi\|76608839 - gi\|76608839\|ref\|XP_877771.1\| PREDICTED: similar to COX17 homolog, cytochrome c oxidase assembly prot...	84.0	[0..1]	[63..26]
COX17 - COX17 cytochrome c oxidase assembly homolog (S. cerevisiae) ENSCJAT00000017281 - null ENSPTRT00000028506 - null	81.0	[0..1]	[63..1]
COX17_CANLF - Cytochrome c oxidase copper chaperone OS=Canis lupus familiaris GN=COX17 PE=3 SV=3	79.0	[0..1]	[63..1]
gi\|114649557 - gi\|114649557\|ref\|XP_001149835.1\| PREDICTED: similar to COX17 [Pan troglodytes]	78.0	[0..1]	[63..1]
COX17_PIG - Cytochrome c oxidase copper chaperone OS=Sus scrofa GN=COX17 PE=1 SV=1	76.0	[0..2]	[63..1]
gi\|187026994, gi... - gi\|39588886\|emb\|CAE69516.1\| Hypothetical protein CBG15725 [Caenorhabditis briggsae], gi\|187026994\|em... gi\|157772725 - gi\|157772725\|ref\|XP_001664427.1\| hypothetical protein CBG15725 [Caenorhabditis briggsae AF16]	76.0	[0..1]	[63..1]

Back

Predicted Domain #1

Region A:
Residues: [1-63]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAEPQKSTE AGSVAPEKKL KACCACPETK RVRDACIIEN GEEKCGKLIE AHKACMRAAG  60
   61 FNI

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.67
Match:	1u96A
Description:	Solution Structure of Yeast Cox17 with Copper Bound
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits